Version 5.6 - Released: 05/06/2013 - Content: 10004 neurons
   Home > About

What is NeuroMorpho.Org?
NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons. It contains contributions from dozens of laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. The goal of NeuroMorpho.Org is to provide free access to all available neuronal reconstruction data in the neuroscience community.

Why is NeuroMorpho.Org relevant?
Morphological data are essential for understanding the cellular complexity of the nervous system and are used for analysis, visualization, and modeling. NeuroMorpho.Org was established to facilitate access to such data and to encourage data sharing within the neuroscience community. A centrally curated and annotated inventory provides the opportunity to access accurate and verified data that is presented in a unified format. Deposition and distribution of reconstruction files ultimately prevents data loss and minimizes effort required by data owners. It also provides a "one-stop" entry point for all available reconstructions, thus maximizing data visibility and impact.

What is included in NeuroMorpho.Org?
Each neuron in NeuroMorpho.Org is represented by a name, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction (see Details on Standardization Process), and a set of morphometric features (see Details on available measures). You can browse the website or search for specific cells (see QuickStart guide). For suggestions, questions not answered in the FAQs, or if you have or know of digital reconstructions of neuronal morphology that could be included in this inventory, please Contact Us.

1 Number of reconstructions in the database at each version release.

   
Quick Factsv5.6
Reconstructions10004
Contributing Labs120
 
Species (21)#neurons
Rat3337
Mouse2726
Human2147
Drosophila398
Monkey376
C. elegans302
Cricket127
Cat103
Goldfish100
Agouti81
Elephant76
Salamander64
Blowfly56
Chicken34
Zebrafish26
Guinea-pig19
Proechimys17
Turtle7
Frog4
Spiny lobster3
Rabbit1
 
Brain Regions (24)#neurons
Neocortex5405
Hippocampus1151
Retina960
Basal forebrain380
Olfactory bulb296
Somatic nervous system282
Anterior olfactory nucleus282
Basal ganglia243
Peripheral nervous system227
Spinal cord136
Medulla131
Cercal sensory system127
Brainstem82
Visual lobe56
Amygdala47
Ventral thalamus46
Optic nerve43
Hypothalamus33
Cerebellum24
Pharyngeal nervous system20
Protocerebrum19
Midbrain6
Dorsal thalamus5
Stomatogastric ganglion3
 
Quick Stats v5.6
Manual tracing hours >240k
Traced neuropil length 57m
Neuronal branches >1million
Visiting countries 125
 
Literature Coverage v5.6.1
Articles mined 23348
Identified positive 1092
Available 228
Unavailable 780
May be available 84
 
Most Downloaded v5.6
Cell type Pyramidal cell
Species Rat
Brain region Neocortex
Archive Jacobs
1 1
    Number of brain regions, cell types, species and     archives in the database at each version release

    See Detailed Statistics for additional     information about the database.

Total number of downloads from and hits to the website. The number of downloads from the website crossed the 2 million mark in early 2012. The asterisk (*) indicates high volume of data downloaded during a national modeling contest held by the South China University of Technology in Guagzhou, China on September 17-20, 2010.

back to top How to contribute data to NeuroMorpho.Org?
The submission process is very straightforward:
1. Email the reconstruction files (zipped, if possible) to: neuromorpho@gmail.com
2. Fill in as much information possible in the Metadata Form and include it in your email.

When we receive your files, the reconstructions will be added to the processing pipeline and you will receive a confirmation email from NeuroMorpho.Org. We will take care of all technical aspects of processing, annotating and uploading your data to the website.

If you have additional questions about data submission, please Contact us.


© Copyright 2006-2013   George Mason University All Rights Reserved.   Link Graphic to NIF website