The following public-domain tools can be useful for more detailed analysis, visualization, and modeling of neurons and their morphology.

Main Tools

• Center for Neural Informatics, Structure, and Plasticity
• Cvapp   [visualization of digital reconstructions]
• L-Measure   [online neuromorphometric analysis]
• NeuroConstruct   [develop biologically realistic 3D neural networks]
• NeuroMorpho database schema
• Neuromantic   [free neuron reconstruction software]
• Neuroscience Information Framework

Repositories of neuronal reconstructions mirrored into NeuroMorpho.Org

• Borst Cells
• Cell-Centered Database
• Claiborne Cells
• Cricket Cercal System Database
• Destexhe Cells
• Duke/Southampton Archive
• Dendritica
• Flybrain@Stanford
• Gulyas archive/Freund Lab
• Spruston cells
• Wearne/Hof Cells
• Yuste Cells

Other useful Links

• 3D Neuron Viewer  [modified Cvapp code on GitHub]
• Allen Institute for Brain Science
• NeuroMorpho.Org Conference  [recognizing the breakthroughs in neuroscience via digital reconstruction of neuronal morphology]
• Diadem Challenge  [to create algorithmic methods for automated neuronal tracing]
• Ecosystem of digital reconstructions  [a review article and an annotated compilation of currently available resources of digital reconstructions. Click here for pdf of the article]
• George Mason University
• Genesis   [general purpose simulation platform]
• Krasnow Institute for Advanced Study
• ModelDB
• Neuro ML
• Neurolucida   [commercial neuron reconstruction software]
• Neuronland   [free software for morphology format conversions]
• NTS (The Eutectic Neuron Tracing System)
• NEURON   [compartmental modeling and simulation]
• Neuron_morpho plugin   [3D reconstruction from image stacks]
• NeuronStudio   [3D reconstruction from confocal and multi-photon images]
• Vaa3D  [Image visualization & analysis]
• Worm Atlas  [A database of behavioral and structural anatomy of C. elegans]